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Commits on Oct 4, 2025

• Merge pull request #497 from nf-core/dev

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  jfy133

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• Apply suggestion from @jfy133

  jfy133

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• Merge branch 'dev' of github.com:nf-core/funcscan into dev

  jfy133

  committed
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• Update amrfinderplus and hAMRonization

  jfy133

  committed
  f082be6

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• Use larger runner

  jfy133

  authored
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• Use larger runner for tests

  jfy133

  committed
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• Update AMRFINDERPLUS to latest (and thus latest version)

  jfy133

  committed
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Commits on Sep 23, 2025

• Fix mistake in html

  jfy133

  committed
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• Apply suggestions from code review

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Commits on Sep 19, 2025

• Merge pull request #498 from nf-core/fix-conda-ci-errors

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  jfy133

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• Update CHANGELOG.md

  jasmezz

  authored
  17ab9f0

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• Fix conda CI errors

  jasmezz

  authored
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• Update docs/usage.md

  jfy133

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Commits on Sep 18, 2025

• Merge pull request #495 from nf-core/bump-version-3.0.0

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  jfy133

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• Update CHANGELOG.md [skip ci]

  jasmezz

  authored
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• Update version in snapshot

  jfy133

  committed
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Commits on Sep 17, 2025

• [automated] Fix code linting

  nf-core-bot

  committed
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• Update workflow PNGs

  jfy133

  committed
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• Version bump for release

  jfy133

  committed
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Commits on Sep 5, 2025

• Merge pull request #494 from nf-core/rgi-update

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  jfy133

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• Update RO crate

  jfy133

  committed
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• Remove workspace size debugging code

  jfy133

  committed
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• Reduce size of results/work by skipping other large database in test_bakta test

  jfy133

  committed
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• Also add a df

  jfy133

  committed
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• Add debugging code to find out why out of space

  jfy133

  committed
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• Add HirSE badge to README

  jfy133

  committed
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Commits on Sep 4, 2025

• Update remaining tests

  jfy133

  committed
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Commits on Sep 3, 2025

• First 3 snapshot updatez

  jfy133

  committed
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• Update RGI modules to 6.0.5

  jfy133

  committed
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Commits on Jul 28, 2025

• Merge pull request #490 from nf-core/fix-code-block-rendering

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  jasmezz

  authored
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• fix code block in help text

  mashehu

  authored
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Commits on Jul 18, 2025

• Merge pull request #486 from nf-core/update-argnorm-citation

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Commits on Jul 17, 2025

• Fix name

  

  jasmezz

  committed
  1b262d1

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• Update bibliography for multiqc report

  

  jasmezz

  committed
  4dc9dd9

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• Update argNorm citation as suggested by @Vedanth-Ramji

  

  jasmezz

  committed
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