Adam Taranto

I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.

👩‍💻 What I'm currently working on

• tanghaibao/jcvi - Python library to facilitate genome assembly, annotation, and comparative genomics (1 week ago)
• oxli-bio/oxli - k-mers and the like (2 weeks ago)
• tseemann/mlst - 🆔 Scan contig files against PubMLST typing schemes (3 weeks ago)
• bioconda/bioconda-recipes - Conda recipes for the bioconda channel. (3 weeks ago)
• Adamtaranto/adamtaranto - (1 month ago)

🔭 Latest releases I've contributed to

• tseemann/mlst (v2.28.1, 4 days ago) - 🆔 Scan contig files against PubMLST typing schemes
• Adamtaranto/tSplit (v0.1.5, 1 month ago) - Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
• qjiangzhao/TEtrimmer (v1.6.2, 1 month ago) - TEtrimmer: a novel tool to automate manual curation of transposable elements
• flexidot-bio/flexidot (v2.0.2, 1 month ago) - Highly customizable, ambiguity-aware dotplots for visual sequence analyses
• Adamtaranto/deRIP2 (v0.4.1, 1 month ago) - Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments.