I am currently completing my M.Sc. in Bioinformatics with a strong focus on transcriptomics and clinical genomics. I am actively looking for jobs and internships at companies and research institutes in these areas.
My hands-on experience includes:
- Conducting bulk RNA-seq analysis for Differential Gene Expression (DGE) using
DESeq2to identify key transcriptomic signatures. - Profiling microRNA NGS data to perform DGE and downstream regulatory network analysis.
- Processing microarray datasets for robust DGE profiling utilizing the
limmapackage. - Applying immuno-informatics approaches for in silico vaccine design and epitope prediction.
🌱 What I am learning: I am currently expanding my skills by diving into:
- Nextflow automation for NGS pipelines to build reproducible workflows.
- Machine Learning applications for biological data analysis.
- Exploring cellular heterogeneity through single-cell RNA-seq data analysis.
- Investigating microbiome composition and diversity through 16S rRNA metagenomics profiling.
- Performing Whole Exome Sequencing (WES) variant calling for clinical genomics across multiple platforms:
- Short-read (Illumina): Utilizing GATK best practices and Google DeepVariant.
- Long-read (Oxford Nanopore): Utilizing specialized tools like Clair tools.
👯 I am always open to collaborating on cancer genomics and multi-omics projects. Let's connect to discuss R scripting, bioinformatics workflows, and working in Linux (WSL)!
