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1. Image-ST Image-ST Public

   Forked from cellgeni/Image-ST

   A pipeline to generate count matrix for different spatial technologies. ISS/MERFISH-like data are decoded using PoSTcode

   Python 2

2. haniffalab/webatlas-pipeline haniffalab/webatlas-pipeline Public

   A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas

   Python 69 13

3. cellgeni/modules cellgeni/modules Public

   Forked from nf-core/modules

   Repository to host tool-specific module files for the Nextflow DSL2 community!

   Nextflow 2

4. workflow-registration workflow-registration Public

   Jupyter Notebook 2

5. workflow-stitching workflow-stitching Public

   Python 2

6. bnoi/MAARS bnoi/MAARS Public

   Fiji/Micro-Manager plugin for Mitotic Analysis And Recording System

   Java 2 3