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1. nf-core/phageannotator nf-core/phageannotator Public

   Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.

   Nextflow 16 9

2. nf-core/mag nf-core/mag Public

   Assembly and binning of metagenomes

   Nextflow 255 142

3. nf-core/readsimulator nf-core/readsimulator Public

   A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.

   Nextflow 32 8

4. HoffLab/biobakerymgx HoffLab/biobakerymgx Public

   Read-preprocessing, taxonomic classification, functional classification, strain analysis, and pangenome analysis using bioBakery tools

   Nextflow 1 7

5. HydeLab/rnafoldanalyzer HydeLab/rnafoldanalyzer Public

   Nextflow 4

6. Cluster-Club/cluster_pval Cluster-Club/cluster_pval Public

   Python 1