About Me

class Nigmat:
    role      = "Biomedical AI Builder"
    focus     = ["Agentic Research Systems", "Translational Bioinformatics",
                 "Scientific Developer Tooling"]
    currently = "A modular biomedical research-tooling stack"
    motto     = "Modular over monolithic · research-aware over generic"

    domains = {
        "research": ["single-cell", "spatial", "imaging", "multi-omics"],
        "clinical": ["streaming AI interfaces", "real-world constraints"],
        "agents":   ["multi-agent orchestration", "publishable automation"],
        "data":     ["TCGA", "GEO", "public-cohort study design"],
    }

Turning ambiguous biomedical questions into reproducible analyses, publishable study designs, and research products people actually use.

Flagship — bioagent

_{An autonomous multi-agent system for end-to-end bioinformatics research — my most-starred work.}

Tech Stack

By the Numbers

Featured Work

What I'm Building Now

🧪 Biomedical Research Stack 🔧 Modular skills for biomedical study design 📊 Publishable TCGA · GEO · omics · spatial workflows 🤖 Agents: idea → research plan → artifact

🎯 Areas I Keep Returning To 🧬 Agentic biomedical research systems 📋 Public-dataset study design & validation 🔬 Single-cell · spatial · imaging · multi-omics 🏥 Clinical AI under real-world constraints

More Projects

🏥  Clinical & Medical Apps

Project	Description
MedInterprint	AI-driven medical interpretation platform
diabeta-ai-insight	AI-powered diabetes analytics
AI-review-Literature	AI-assisted literature review

🧬  Bioinformatics & Omics Tooling

Project	Description
rverflow	Resolves R package dependency hell across CRAN/Bioconductor/GitHub
Gastric-Cancer-scRNA-seq-Pipeline	Single-cell RNA-seq pipeline (GSE163558)
SC-single-cell-analysis-web	Web-based single-cell analysis platform

��  Agent & Developer Infrastructure

Project	Description
Agent-loop	Agent execution loop framework
MCP-manager	Auto-management for Model Context Protocol servers
pad-to-vibe	Tablet sketches → Claude Code via MCP

🔬  Experiments & Visual Explorations

Project	Description
comparision-minimax-glm-5.1	MiniMax M2.7 vs GLM-5.1 deep architectural analysis
scicolors	Scientific color-palette toolkit
thrombin-comparison	Thrombin structural comparison

Working Style

✦ Modular          over   Monolithic
✦ Research-aware    over   Generic
✦ Execution-first   over   Presentation-heavy
✦ Real workflows    over   Demo-only