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1. base-space-download-fastq-with-checksums base-space-download-fastq-with-checksums Public

   Download FASTQ files from Illumina BaseSpace via the CLI with checksums

   Nextflow 3

2. dna-alignment-pipeline dna-alignment-pipeline Public

   DNA alignment pipeline tailored to IGMM compute cluster

   Perl 2

3. rnaseq rnaseq Public

   Forked from nf-core/rnaseq

   RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

   Nextflow 1

4. nanoseq nanoseq Public

   Forked from nf-core/nanoseq

   Nanopore demultiplexing, QC and alignment pipeline

   Nextflow 1

5. somalier somalier Public

   Forked from brentp/somalier

   fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs

   Nim

6. merge_fastq merge_fastq Public

   Forked from lconde-ucl/merge_fastq

   Nextflow pipeline to merge FastQ files from different lanes

   Nextflow 1