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1. Pathogen-Genomics-Cymru/lodestone Pathogen-Genomics-Cymru/lodestone Public

   Mycobacterial pipeline

   Python 11 5

2. Pathogen-Genomics-Cymru/covate Pathogen-Genomics-Cymru/covate Public

   Examines relationship of SARS-CoV-2 lineage growth between UK regions

   Python 1

3. Pathogen-Genomics-Cymru/pathogen-mongodb Pathogen-Genomics-Cymru/pathogen-mongodb Public

   MongoDB Service

   Python

4. autodatabase autodatabase Public

   automated kraken database build using nextflow DSL2

   Nextflow 5 1

5. pdf-scraper pdf-scraper Public

   PDF parser using pdfminer and pytesseract for OCR support

   Python 11 1

6. nlp-bio-tools nlp-bio-tools Public

   Collection of dockerized apps for text mining, NLP, and machine learning classification of biomedical pdfs

   Python 1