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cbp44/README.md

Hi 👋.

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  1. docker-snakemake docker-snakemake Public

    Dockerfiles to create best practice containers for running and developing Snakemake workflows

    Dockerfile 1

  2. metaseqlite metaseqlite Public

    A Python 3 compatible version of the major features of metaseq, a framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

    Python

  3. Convert GTF to TSS BED file Convert GTF to TSS BED file
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    #!/bin/sh
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    # Creates a sorted BED file with all transcript TSS locations with the Ensembl transcript id for the name column
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    # This script does this for the Mouse vM19 annotaions, but should work just fine with Human GTF as well
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    wget ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M19/gencode.vM19.annotation.gtf.gz
    
              
    
          
    
    
    
  
    

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        Create NCBI RefSeq Select BED12 file  Create NCBI RefSeq Select BED12 file      
    

          
    
              
    
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    ## Create NCBI RefSeq Select BED12 file
    
              
    
              
    
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    This gist shows you how to create a BED file in [BED12 format](https://ensembl.org/info/website/upload/bed.html) containing every protein-coding NCBI RefSeq Select gene with the exons annotated as blocks in the BED file.
    
              
    
              
    
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    1. First, download a TSV file of [NCBI RefSeq Select](https://www.ncbi.nlm.nih.gov/refseq/refseq_select) genes
    
              
    
          
    
    
    
  
    

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          docker-copier  docker-copier          Public
        
    
      
    


      
    
        Alpine-based Docker container for securely running the copier template rendering software
      
    

      
    
          
  
  Dockerfile


          
            
    

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        Unbound DNS block list cronjob  Unbound DNS block list cronjob      
    

          
    
              
    
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    #!/bin/sh
    
              
    
              
    
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    # This script updates malware and phishing filters for unbound DNS resolver
    
              
    
              
    
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    # To use it, place in /etc/cron.daily/unbound-filter-update and chmod 0755 /etc/cron.daily/unbound-filter-update
    
              
    
              
    
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    # Get filter of potentially unwanted programs (PUPs)
    
              
    
          
    
    
    
  
    

    7.