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1. sourmash-bio/sourmash sourmash-bio/sourmash Public

   Quickly search, compare, and analyze genomic and metagenomic data sets.

   Python 526 88

2. spacegraphcats/spacegraphcats spacegraphcats/spacegraphcats Public

   Indexing & querying large assembly graphs -- in space, no one can hear you miao!

   Standard ML 118 15

3. dib-lab/charcoal dib-lab/charcoal Public

   Remove contaminated contigs from genomes using k-mers and taxonomies.

   Python 59 2

4. dib-lab/genome-grist dib-lab/genome-grist Public

   map Illumina metagenomes to genomes!

   Jupyter Notebook 38 6