GitHub - downsea/seqscripts: Scripts for parsing the output from the Tophat/Cufflinks/Cuffcompare pipeline into other formats and analyzing and editing GTF files.

junkdrawer

This is a collection of small scripts or how-tos that don't fall under a separate project

Name		Name	Last commit message	Last commit date
Latest commit History 148 Commits
bcbio		bcbio
gffutils-utils		gffutils-utils
singlecell		singlecell
tasks		tasks
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
barcodes.py		barcodes.py
biopolymers-manifest-to-bcbio.py		biopolymers-manifest-to-bcbio.py
clip_reads.py		clip_reads.py
compare-miso.py		compare-miso.py
convert-symbols-between-organisms.R		convert-symbols-between-organisms.R
detect_fastq_format.py		detect_fastq_format.py
extract-barcode.py		extract-barcode.py
fasta_to_fastq.py		fasta_to_fastq.py
flux-simulator-deinterleave.py		flux-simulator-deinterleave.py
genotype-likelihoods.py		genotype-likelihoods.py
miso-tables.py		miso-tables.py
misofy-gtf.py		misofy-gtf.py
radar-convert-annotations.py		radar-convert-annotations.py
reverse_complement.py		reverse_complement.py
shuffle_fasta.py		shuffle_fasta.py
shuffle_fastq.py		shuffle_fastq.py
top-deseq2-hits-plot.R		top-deseq2-hits-plot.R
tx2gene.py		tx2gene.py
unique_reads.py		unique_reads.py
vcf2tsv.py		vcf2tsv.py