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Commits on Oct 18, 2017

• Add bcbio project summary metrics -> CSV converter.

  roryk

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Commits on Oct 4, 2017

• Add simpler version of tx2gene script.

  roryk

  committed
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Commits on Sep 12, 2017

• Add example to convert symbols between organisms using biomaRt.

  roryk

  committed
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Commits on Jul 26, 2017

• Add example plot for plotting top DESeq2 hits.

  roryk

  committed
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Commits on Feb 12, 2017

• Example script for converting and combining sparse tables from the indrops pipeline.

  roryk

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Commits on Sep 15, 2016

• Add script demonstrating how to do power calculation estimates.

  roryk

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Commits on Jun 1, 2016

• Add script to convert GTF to BED file.

  roryk

  committed
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Commits on May 23, 2016

• Make a tidy file of all miso summaries.

  roryk

  committed
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Commits on May 22, 2016

• Add script to run all pairwise MISO comparisons for each event type.

  roryk

  committed
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Commits on May 20, 2016

• Add genome suffix and logging messages.

  roryk

  committed
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• Add script to make MISO event files from a GTF.

  roryk

  committed
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Commits on May 19, 2016

• Add explicit license, just in case.

  roryk

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Commits on May 4, 2016

• Add proper bzip2 extension.

  roryk

  committed
  d399f1d

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• Add support for paired end reads.

  roryk

  committed
  5463e0e

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• Convert manifest from Biopolymers into a bcbio-ready sample CSV.

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  roryk

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Commits on Mar 14, 2016

• Add script to reverse complement a set of sequences.

  roryk

  committed
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• Dump a tx2gene file from a gffutils database.

  roryk

  committed
  6ec86e9

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• Add script to extract reads or alignments matching a barcode.

  roryk

  committed
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Commits on Mar 3, 2016

• Remove debugging code.

  roryk

  committed
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• Add VCF -> non-reference likelihood table script.

  roryk

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Commits on Feb 16, 2016

• Add script to prep the klein lab's barcodes.

  roryk

  committed
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Commits on Jan 3, 2016

• Guess if we need to infer the extent of genes/transcripts.

  roryk

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Commits on Dec 15, 2015

• Update README.

  roryk

  committed
  c2e76df

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• Remove old exon-skipping scripts.

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  roryk

  committed
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• More removal of outdated stuff, mostly superceded by gffutils.

  roryk

  committed
  1dd6fe7

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• Remove gtf2fasta as it has been superceded by better implementations.

  roryk

  committed
  15d9b16

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• Remove scripts better accomplished via gffutils.

  roryk

  committed
  a9e5572

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• Add gffutils-utils.

  roryk

  committed
  12d6f2e

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• Remove unused reheadering scripts.

  roryk

  committed
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Commits on Dec 14, 2015

• Remove useless script.

  roryk

  committed
  f4cf9d0

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• Script to convert a FASTA file to FASTQ using dummy quality values.

  roryk

  committed
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Commits on Dec 10, 2015

• Add script to shuffle paired fastq sequences.

  roryk

  committed
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Commits on Nov 29, 2015

• gzip the output.

  roryk

  committed
  e3c6585

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• Update with sorting/filtering.

  roryk

  committed
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Commits on Nov 28, 2015

• Add script to convert RADAR annotations.

  roryk

  committed
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