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1. pyranges/pyranges_1.x pyranges/pyranges_1.x Public

   Pyranges: a Python framework for ultrafast sequence interval operations

   Python 45 8

2. pyranges/ruranges_py pyranges/ruranges_py Public

   Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library

   Python 30 5

3. pyranges/pyranges pyranges/pyranges Public

   Performant Pythonic GenomicRanges

   Python 494 50

4. pyranges/ncls pyranges/ncls Public

   NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.

   C 223 24

5. biocore-ntnu/epic2 biocore-ntnu/epic2 Public

   Ultraperformant reimplementation of SICER

   Cython 59 10

6. pyranges/pyrle pyranges/pyrle Public

   Numerical Run Length Encoding and Arithmetic in Cython

   Python 19 4