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  • Boehringer Ingelheim
  • Biberach, DE
  • 22:36 (UTC +01:00)

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@conda-forge @bioconda @jupyterlab @nf-core @icbi-lab

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grst/README.md

Gregor Sturm

Publications (Google Scholar) | GPG Key | Bluesky | Linkedin

I am a Research Software Engineer and Bioinformatics Scientist focusing on Immuno-Oncology. I work as a Clinical Bioinformatics Scientist at Boehringer Ingelheim. Before that, I did my PhD at icbi-lab. I am a core developer at scverse maintaining scirpy and some infrastructure packages. I am an active contributor to the nf-core community. In my free time, I love being outdoors, in particular orienteering, mountain biking and ski mountaineering.

Blog

Here are some articles I wrote:

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  1. scverse/scirpy scverse/scirpy Public

    A scanpy extension to analyse single-cell TCR and BCR data.

    Python 242 41

  2. Boehringer-Ingelheim/dso Boehringer-Ingelheim/dso Public

    Data Science Operations (dso) command line tool

    Python 44 2

  3. icbi-lab/infercnvpy icbi-lab/infercnvpy Public

    Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

    Python 180 31

  4. nf-core/scrnaseq nf-core/scrnaseq Public

    Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

    Nextflow 302 207

  5. rstudio-server-conda rstudio-server-conda Public

    Run Rstudio Server in a conda environment

    Shell 248 50

  6. omnideconv/immunedeconv omnideconv/immunedeconv Public

    A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

    R 512 102