Pinned Loading

1. scverse/scanpy scverse/scanpy Public

   Single-cell analysis in Python. Scales to >100M cells.

   Python 2.4k 741

2. scverse/anndata scverse/anndata Public

   Annotated data.

   Python 735 190

3. scverse/spatialdata scverse/spatialdata Public

   An open and interoperable data framework for spatial omics data

   Python 365 87

4. scverse/genomic-features scverse/genomic-features Public

   Genomic Features in Python from BioConductor's AnnotationHub

   Python 23 5

5. constclust constclust Public

   Consistent Clusters for scRNA-seq

   Python 11