Hello! 👋 I am a Associate Profesor at Chiba University studying ferns, an ancient and diverse lineage of vascular plants.
I am an enthusiastic adherent of reproducible data analysis, especially with R.
Please check out https://www.joelnitta.com/ for more info.
- canaper: Categorial analysis of neo-and paleo-endemism
- taxastand: Standardize species names across data sources
- dwctaxon: Tools for working with Darwin Core Taxon data
- rmdref: Tools for reference management in Rmarkdown
- gbfetch: Fetch sequences from GenBank
- canopylife: Code for Nitta et al. "Life in the canopy: Community trait assessments reveal substantial functional diversity among fern epiphytes"
- moorea_filmies: Code for Nitta et al. "Ecophysiological differentiation between life stages in filmy ferns (Hymenophyllaceae)"
- japan_ferns_spatial_phy: Code for Nitta et al. "Spatial phylogenetics of Japanese ferns: Patterns, processes, and implications for conservation"
- gameto-barcode-review: Code for Nitta & Chambers "Identifying cryptic fern gametophytes using DNA barcoding: A review"
- nectandra_ferns: Code for Nitta et al. "A taxonomic and molecular survey of the pteridophytes of the Nectandra Cloud Forest Reserve, Costa Rica"
- japan_ferns_review: Code for Ebihara & Nitta "An update and reassessment of fern and lycophyte diversity data in the Japanese Archipelago"
- pleurosoriopsis: Code for Ebihara et al. "Growth Dynamics of the Independent Gametophytes of Pleurorosiopsis makinoi (Polypodiaceae)"
- targets_bioinfo_example: Example bioinformatics workflow with targets, conda, and docker
- targets_gapminder_example: Example data analysis workflow using R targets package
- targets_vcf_example: Example variant calling workflow using R targets package
- entap-docker: Docker image to run EnTAP
- sqanti3-docker: Docker image to run SQANTI3
- taxastand-docker: Docker image to run taxastand
- kindel-docker: Docker image to run kindel
- hybpiper-docker: Docker image to run HybPiper