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1. MarksLab-DasLab/RNAGym MarksLab-DasLab/RNAGym Public

   RNAGym is an extensive benchmark suite and resource for RNA fitness and structure prediction

   Python 30 5

2. tModLoader/tModLoader tModLoader/tModLoader Public

   A mod to make and play Terraria mods. Supports Terraria 1.4 (and earlier) installations

   C# 5.1k 2k

3. ParmEd/ParmEd ParmEd/ParmEd Public

   Parameter/topology editor and molecular simulator

   Python 448 166

4. RyanLeeHayes/ALF RyanLeeHayes/ALF Public

   Adaptive landscape flattening scripts for MSLD

   Cuda 17 6

5. openmm/pdbfixer openmm/pdbfixer Public

   PDBFixer fixes problems in PDB files

   Python 626 128

6. RogueEdit RogueEdit Public

   Inventory editor for Roguelands

   C++ 11 7