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This solves my problem, the token needs to be created here: https://github.com/settings/tokens/new.

export now=$(date +%Y-%m-%dT%H:%M:%SZ)
curl -H "Authorization: bearer $TOKEN" -X PUT -H "Accept: application/vnd.github.v3+json" https://api.github.com/notifications -d '{"last_read_at":"'"$now"'"}'

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@nosqldev
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@faridvatani
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Answer selected by aimuz
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Bug GitHub or a GitHub feature is not working as intended Notifications Keep track of everything happening across all your projects
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