Hello,
I am having trouble converting SingleCellExperiment objects from the scRNAseq bioconductor collection using as.Seurat. Here's a reproducible example:
BiocManager::install('scRNAseq')
library(scRNAseq)
sce <- ZilionisLungData('mouse')
seurat <- as.Seurat(sce, counts = "counts", data=NULL)
Error in embeddings[i, j, drop = drop, ...] : subscript out of bounds
Several other datasets in the collection give similar errors. Any idea what's going on here? can I e.g. ask as.Seurat to only convert counts and metadata?
Thanks in advance,
-massimo
Hello,
I am having trouble converting SingleCellExperiment objects from the scRNAseq bioconductor collection using
as.Seurat. Here's a reproducible example:Several other datasets in the collection give similar errors. Any idea what's going on here? can I e.g. ask
as.Seuratto only convert counts and metadata?Thanks in advance,
-massimo