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1. CellChat CellChat Public archive

   R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

   R 748 166

2. CellChatShiny CellChatShiny Public

   Forked from ucigenomics/CellChatShiny

   Standalone shiny server container for viewing CellChat object

   R 12 2

3. scAI scAI Public

   An unsupervised approach for the integrative analysis of single-cell multi-omics data

   R 31 8

4. scEpath scEpath Public

   An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data

   C++ 18 11

5. nlvelo nlvelo Public

   R pacakge for RNA velocity estimation with nonlinear models

   R 3 2

6. jinworks/CellChat jinworks/CellChat Public

   R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

   R 496 91