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1. TackleBox TackleBox Public

   TackleBox is a collection of module tools for targeted ancient DNA research.

   Python

2. RxSexID RxSexID Public

   RxSexID infers biological sex from mapped reads using the Rx statistic (Skoglund et al. 2013): the ratio of X-chromosome coverage to an autosomal baseline for ancient and degraded DNA

   Python

3. PalaeoKin PalaeoKin Public

   PalaeoKin is a lightweight ancient-DNA pipeline for estimating pairwise relatedness from mapped BAMs at low/uneven coverage. It wraps ANGSD + NgsRelate (KING-robust kinship, R0/R1) and samtools, pr…

   Shell

4. Workbench Workbench Public

   A semi-random collection of small, useful tools for ancient DNA bioinformatics, plotting, and file summaries.

   Python

5. BenchMark BenchMark Public

   Pipeline-aware CPU, memory, and I/O monitoring for ancient DNA and metagenomic classification workflows — per-step CSVs and detailed comparison plots.

   Python