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1. gatech-genemark/ProtHint gatech-genemark/ProtHint Public

   Protein hint generation pipeline for gene finding in eukaryotic genomes

   Python 60 13

2. Gaius-Augustus/BRAKER Gaius-Augustus/BRAKER Public

   BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

   Perl 436 89

3. miniprothint miniprothint Public

   Miniprothint selects a set of reliable gene prediction hints from miniprot alignments scored by miniprot boundary scorer.

   Python 9 2

4. orthodb-clades orthodb-clades Public

   Generation of OrthoDB protein sets for gene prediction experiments

   Python 11 3

5. Gaius-Augustus/GALBA Gaius-Augustus/GALBA Public

   GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

   Perl 146 6

6. linuxmint/nemo linuxmint/nemo Public

   File browser for Cinnamon

   C 1.4k 328