Reference-guided transcript discovery and quantification for long read RNA-Seq data

Nanopore data analysis in R

An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads

R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions

Bioinformatics pipeline for nanopore sequencing data

Code for "High-throughput and high-sensitivity full-length single-cell RNA-seq analysis on third-generation sequencing platform" paper. Pipeline for SCAN-seq2 data processing.

NanoBlot is an open source R package that generates northern blot and RT-PCR like images from long-read sequencing data.

This is the repository for the manuscript “Expanding the transcriptomic toolbox in prokaryotes by Nanopore sequencing of RNA and cDNA molecules.” In this study, we applied and benchmarked all currently available RNA-seq kits from Oxford Nanopore technologies to analyse RNAs in the prokaryotic model organism Escherichia coli K-12.

An R package for managing, summarizing, and analyzing third-generation methylation sequencing data (.ch3 files). Includes database creation, QC, differential methylation, and visualization tools.

⚔️🏰 Pipeline for sequencing of SARS-CoV-2 on local workstations with realtime (ONT) basecalling

Identify and characterize repeat expansions in long read data

NanoSwe: Analysing nanopore (PromethION) data of Swedish genomes

Nanopore Metagenomic Antibiotic Resistance and Taxonomy Screening

R package for DNA methylation analysis on Direct Whole Methylome Sequencing (dWMS) data.

This repository is the current repository for our Jones et al. 2024 manuscript titled Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage.

Accompanying information to a scientific publication on the assembly of bacterial genomes using Illumina and nanopore sequencing data using Unicylcer.