Set of tools to generate a multi-eGO force field to perform molecular dynamics simulations
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Jun 30, 2026 - C++
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self-assembly
Here are 26 public repositories matching this topic...
A Forth JIT & AOT compiler designed for self-assembling and self-bootstrapping.
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Jun 28, 2026 - C
This code allows users to simulate ions confined between material surfaces that are nanometers apart, and extract the associated ionic structure.
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Nov 11, 2023 - Jupyter Notebook
AI models for prediction and design of novel self-assembling peptides
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Nov 19, 2024 - Python
This code trains and implements a stochastic physics-informed neural ordinary differential equation (SPINODE) framework on a directed colloidal self-assembly test case.
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Feb 7, 2024 - Jupyter Notebook
Developed and simulated a randomly scattered collective of robots with sensors to self-assemble into any given connected shape, using gradient information derived from the desired shape.
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Jan 13, 2021 - MATLAB
Model self assembly of particles using Inverse Gaussian Noise
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Apr 25, 2020 - Jupyter Notebook
This repository contains the software used in the papers "Self-Replicating Machines in Continuous Space with Virtual Physics" and "Self-Replication and Self-Assembly for Manufacturing" (see self-replicating-machines.pdf and self-replication-and-self-assembly.pdf).
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Jan 9, 2020 - Java
Open-source desktop nanofactory + honest synthesizer thesis: an AI compiler turns a shape into an orderable DNA-origami recipe (scaffold + optimized staples + wet-lab protocol + 3D oxDNA), behind one request router over water/drink/print/molecular makers. Citation-gated, buildable from <$1500 of parts; reproducible physics research.
synthetic-biology open-hardware bioengineering self-assembly nanofabrication oxdna nanotechnology dna-origami dna-nanotechnology molecular-manufacturing atomically-precise-manufacturing nanofactory
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Jun 18, 2026 - Python
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Oct 4, 2025 - Python
Material for the 'Trieste Next' popular science festival. SISSA group 2023/2024.
monte-carlo monte-carlo-simulation self-organization self-assembly superconductivity tkinter-gui superfluids cheerios popular-science pop-science
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Sep 26, 2024 - Python
This code trains and implements a characterization framework based on deep learning for characterizing structural states of colloidal self-assembly systems.
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Feb 7, 2024 - Python
Simulation software for patchy particles in 2d
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Nov 14, 2018 - C
This repository contains the post-processed data and MATLAB scripts used to reproduce all figures presented in the manuscript and Supplementary Information (SI) of: "Nonequilibrium Self-Assembly Control by the Stochastic Landscape Method". Authors: Michael Faran and Prof. Gili Bisker.
control physics kinetic-monte-carlo bayesian-inference computational-model coarse-graining self-assembly trend-analysis first-passage-times control-protocol many-particle-system nonequilibrium trend-based-modeling
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Dec 23, 2024 - MATLAB
Python library and Julia scripts to simulate several Flexible Chain Walker (FCW) models.
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Feb 23, 2020 - Jupyter Notebook
Simulation of 2D self-assembly driven by depletion force
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Jun 1, 2017 - Python
Decentralized swarm self-assembly: identical units build & self-heal a staircase from one neighbour-only local rule. Kilobot-style gradient assembly, tested.
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Jun 8, 2026 - Python
Binary subsite extension to the polyomino self-assembly model
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Apr 25, 2019 - Python
Game for self-assembly to improve memory
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Oct 3, 2017 - Arduino
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