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1. GeneMates GeneMates Public

   An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences

   R 27 2

2. NITREc NITREc Public

   Chromosomal mutations associated with nitrofurantoin resistance in Escherichia coli

   Python 1

3. readSimulator readSimulator Public

   Simulating paired-end short sequencing reads from circular and linear genomes

   Python 15 3

4. BINF_toolkit BINF_toolkit Public

   Handy scripts for routine bioinformatic analysis

   Python 20 9

5. Assembly_toolkit Assembly_toolkit Public

   Scripts for de novo genome assembly

   Shell

6. Taxonomy_toolkit Taxonomy_toolkit Public

   Scripts facilitating taxonomical analysis

   Shell