Pinned Loading

1. Epi-Flow Epi-Flow Public

   A unified, end-centric pipeline for processing chromatin accessibility and occupancy assays—from ATAC-seq to CUT&RUN, ChIP-seq, and beyond.

   Shell

2. ComplexMap ComplexMap Public

   A Toolset for the Functional Analysis and Visualization of Protein Complex Data

   R

3. SingleCellFeatureProfiler SingleCellFeatureProfiler Public

   A powerful, multi-interface Python package for deep characterization of gene expression patterns from single-cell data

   Python

4. ShinyCITExpresso ShinyCITExpresso Public

   A ShinyApp for visualization and explorering Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE-seq) data

   R 1

5. SMAD SMAD Public

   Latest update of Bioconductor package SMAD

   R 1

6. GEX_Index_Builder GEX_Index_Builder Public

   Automated RNA-seq reference builder for STAR and Salmon. Features container-aware memory detection, automatic Ensembl/GENCODE downloads, and version-controlled index generation.

   Shell