satijalab / seurat
R toolkit for single cell genomics
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R toolkit for single cell genomics
An implementation of the Grammar of Graphics in R
R's data.table package extends data.frame:
R toolkit for the analysis of single-cell chromatin data
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Simple Features for R
Accurate sample inference from amplicon data with single nucleotide resolution
Easy interactive web applications with R
dplyr: A grammar of data manipulation
'ggplot2' Based Publication Ready Plots
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
renv: Project environments for R.
RStan, the R interface to Stan
R Interface to Python
An interactive graphing library for R
Inferring CNV from Single-Cell RNA-Seq
Survival Analysis and Visualization